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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04086
Details:

PFam ID : PF04086

PFam Domain Description : Signal recognition particle, alpha subunit, N-terminal

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 171

Average sequence length: 223.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04086B6JY97_SCHJY_94_24373.1
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF04086A5E341_LODEL_76_24497.6
Sequence based PCA Plot of the family - PF04086 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=221 Length=8
Motif3 Start=51 Length=8
Motif4 Start=2 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay