3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04086 Details: PFam ID : PF04086 PFam Domain Description : Signal recognition particle, alpha subunit, N-terminal Number of Sequence in 50% Dataset : 83 Number of Sequence in Full Dataset : 171 Average sequence length: 223.0 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04086B6JY97_SCHJY_94_24373.1 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF04086A5E341_LODEL_76_24497.6 Sequence based PCA Plot of the family - PF04086 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=11 Length=8Motif2 Start=221 Length=8Motif3 Start=51 Length=8Motif4 Start=2 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF04086
PFam Domain Description : Signal recognition particle, alpha subunit, N-terminal
Number of Sequence in 50% Dataset : 83
Number of Sequence in Full Dataset : 171
Average sequence length: 223.0
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER