3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00140

Details:

PFam ID : PF00140

PFam Domain Description : Sigma-70 factor, region 1.2

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 1436

Average sequence length: 36.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00140	E8R2H9_ISOPI_31_53	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00140	D2ML68_9BACT_100_118	99.6

Sequence based PCA Plot of the family - PF00140 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay