3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04520

Details:

PFam ID : PF04520

PFam Domain Description : Senescence regulator

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 164

Average sequence length: 144.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04520	D7SKY7_VITVI_5_63	94

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04520	D7L3Y3_ARALL_22_242	100

Sequence based PCA Plot of the family - PF04520 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=67 Length=11
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay