3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08238

Details:

PFam ID : PF08238

PFam Domain Description : Sel1 repeat

Number of Sequence in 50% Dataset : 1595

Number of Sequence in Full Dataset : 14959

Average sequence length: 35.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08238	D5Y380_MYCTU_28_177	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08238	B0UAD1_METS4_92_132	30

Sequence based PCA Plot of the family - PF08238 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=26 Length=14
Motif2 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay