3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05324

Details:

PFam ID : PF05324

PFam Domain Description : Sperm antigen HE2

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 14

Average sequence length: 54.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05324	Q6VZ88_CNPV_1_112	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05324	SPG11_MOUSE_3_29	100

Sequence based PCA Plot of the family - PF05324 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay