3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03105

Details:

PFam ID : PF03105

PFam Domain Description : SPX domain

Number of Sequence in 50% Dataset : 327

Number of Sequence in Full Dataset : 1146

Average sequence length: 164.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03105	Q18JH3_HALWD_743_825	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03105	A7AUR6_BABBO_1_45	99.9

Sequence based PCA Plot of the family - PF03105 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=282 Length=8
Motif3 Start=1 Length=8
Motif4 Start=429 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay