3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08598

Details:

PFam ID : PF08598

PFam Domain Description : Sds3-like

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 203

Average sequence length: 227.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08598	B3S670_TRIAD_39_175	38.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08598	A5DKP2_PICGU_289_499	98.5

Sequence based PCA Plot of the family - PF08598 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay