3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11757

Details:

PFam ID : PF11757

PFam Domain Description : Suppressor of RNA silencing P21-like

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 13

Average sequence length: 126.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11757	A6FEA9_9GAMM_9_120	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11757	Q91M07_9CLOS_10_153	100

Sequence based PCA Plot of the family - PF11757 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay