3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04056

Details:

PFam ID : PF04056

PFam Domain Description : Ssl1-like

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 161

Average sequence length: 167

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04056	Q872T8_NEUCR_83_151	65.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04056	D4A6E9_RAT_64_170	100

Sequence based PCA Plot of the family - PF04056 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=151 Length=8
Motif3 Start=75 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay