3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02881

Details:

PFam ID : PF02881

PFam Domain Description : SRP54-type protein, helical bundle domain

Number of Sequence in 50% Dataset : 155

Number of Sequence in Full Dataset : 2299

Average sequence length: 77.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02881	Q8D3D0_WIGBR_9_104	6.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02881	Q8D3D0_WIGBR_9_104	99.7

Sequence based PCA Plot of the family - PF02881 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=18 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay