3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02774

Details:

PFam ID : PF02774

PFam Domain Description : Semialdehyde dehydrogenase, dimerisation domain

Number of Sequence in 50% Dataset : 124

Number of Sequence in Full Dataset : 2260

Average sequence length: 170.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02774	F0V2T9_9MOLU_123_262	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02774	D4G7W0_RIEPU_145_355	94.6

Sequence based PCA Plot of the family - PF02774 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=56 Length=8
Motif2 Start=75 Length=8
Motif3 Start=92 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay