3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05510

Details:

PFam ID : PF05510

PFam Domain Description : Sarcoglycan alpha/epsilon

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 49

Average sequence length: 321.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05510	A8XC78_CAEBR_1_397	86.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05510	E9HGM7_DAPPU_1_386	100

Sequence based PCA Plot of the family - PF05510 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=156 Length=8
Motif4 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay