3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01852

Details:

PFam ID : PF01852

PFam Domain Description : START domain

Number of Sequence in 50% Dataset : 296

Number of Sequence in Full Dataset : 899

Average sequence length: 184.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01852	E2NJG0_9BACE_4_88	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01852	B0WCN9_CULQU_479_554	97.8

Sequence based PCA Plot of the family - PF01852 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=172 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay