3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06512

Details:

PFam ID : PF06512

PFam Domain Description : Sodium ion transport-associated

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 222

Average sequence length: 196.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06512	A7SKR1_NEMVE_767_837	79.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06512	Q5K2B5_9MAXI_261_519	100

Sequence based PCA Plot of the family - PF06512 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=202 Length=8
Motif3 Start=188 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay