3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06677

Details:

PFam ID : PF06677

PFam Domain Description : Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 148

Average sequence length: 40.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06677	B0CBJ2_ACAM1_61_93	13.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06677	B7FXK8_PHATC_987_1029	99.3

Sequence based PCA Plot of the family - PF06677 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=25 Length=8
Motif3 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay