3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10322

Details:

PFam ID : PF10322

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Sru

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 181

Average sequence length: 236.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10322	E3LE53_CAERE_8_324	82.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10322	E3LE53_CAERE_8_324	100

Sequence based PCA Plot of the family - PF10322 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=17
Motif2 Start=57 Length=8
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay