3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03419

Details:

PFam ID : PF03419

PFam Domain Description : Sporulation factor SpoIIGA

Number of Sequence in 50% Dataset : 104

Number of Sequence in Full Dataset : 153

Average sequence length: 263.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03419	A7VB63_9CLOT_1_135	96.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03419	C0EY85_9FIRM_9_314	100

Sequence based PCA Plot of the family - PF03419 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=41 Length=8
Motif2 Start=23 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay