3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05229

Details:

PFam ID : PF05229

PFam Domain Description : Spore Coat Protein U domain

Number of Sequence in 50% Dataset : 167

Number of Sequence in Full Dataset : 444

Average sequence length: 141.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05229	A9ZX92_YERPE_1_61	90.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05229	B9TD65_RICCO_24_62	98.8

Sequence based PCA Plot of the family - PF05229 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8
Motif4 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay