3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01488 Details: PFam ID : PF01488 PFam Domain Description : Shikimate / quinate 5-dehydrogenase Number of Sequence in 50% Dataset : 448 Number of Sequence in Full Dataset : 2597 Average sequence length: 121.4 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01488D6PCX0_9BACT_37_9095.7 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01488C6HUM8_9BACT_114_188100 Sequence based PCA Plot of the family - PF01488 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=49 Length=8Motif2 Start=12 Length=20Motif3 Start=40 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF01488
PFam Domain Description : Shikimate / quinate 5-dehydrogenase
Number of Sequence in 50% Dataset : 448
Number of Sequence in Full Dataset : 2597
Average sequence length: 121.4
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER