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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01488
Details:

PFam ID : PF01488

PFam Domain Description : Shikimate / quinate 5-dehydrogenase

Number of Sequence in 50% Dataset : 448

Number of Sequence in Full Dataset : 2597

Average sequence length: 121.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01488D6PCX0_9BACT_37_9095.7
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01488C6HUM8_9BACT_114_188100
Sequence based PCA Plot of the family - PF01488 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=49 Length=8
Motif2 Start=12 Length=20
Motif3 Start=40 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay