3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03907

Details:

PFam ID : PF03907

PFam Domain Description : Spo7-like protein

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 64

Average sequence length: 188.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03907	Q6CAG0_YARLI_170_214	35.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03907	C1GNY1_PARBA_90_246	100

Sequence based PCA Plot of the family - PF03907 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=7 Length=8
Motif3 Start=209 Length=8
Motif4 Start=122 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay