3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03538

Details:

PFam ID : PF03538

PFam Domain Description : Salmonella virulence plasmid 28.1kDa A protein

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 80

Average sequence length: 265.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03538	A1ZN96_9BACT_1_145	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03538	Q1IFC7_PSEE4_24_378	100

Sequence based PCA Plot of the family - PF03538 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8
Motif3 Start=32 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay