3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04386

Details:

PFam ID : PF04386

PFam Domain Description : Stringent starvation protein B

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 465

Average sequence length: 149.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04386	D0L0X9_HALNC_1_175	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04386	Q04NG0_LEPBJ_52_153	99.7

Sequence based PCA Plot of the family - PF04386 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=78 Length=8
Motif2 Start=167 Length=8
Motif3 Start=66 Length=8
Motif4 Start=15 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay