3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12115

Details:

PFam ID : PF12115

PFam Domain Description : Salivary protein of 15kDa inhibits CD4+ T cell activation

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 69

Average sequence length: 121.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12115	B7PW12_IXOSC_1_105	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12115	Q5Q999_IXOSC_3_117	94.1

Sequence based PCA Plot of the family - PF12115 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=74 Length=8
Motif4 Start=94 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay