3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02201

Details:

PFam ID : PF02201

PFam Domain Description : SWIB/MDM2 domain

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 477

Average sequence length: 73.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02201	B7XIF0_ENTBH_105_192	31.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02201	E7R8F8_PICAD_353_431	100

Sequence based PCA Plot of the family - PF02201 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=27 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay