3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02023

Details:

PFam ID : PF02023

PFam Domain Description : SCAN domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 200

Average sequence length: 91.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02023	B7PH15_IXOSC_1_54	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02023	B7PBT9_IXOSC_105_202	100

Sequence based PCA Plot of the family - PF02023 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=55 Length=8
Motif2 Start=4 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay