3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00450

Details:

PFam ID : PF00450

PFam Domain Description : Serine carboxypeptidase

Number of Sequence in 50% Dataset : 525

Number of Sequence in Full Dataset : 1883

Average sequence length: 341.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00450	E6RCI6_CRYGW_7_130	72.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00450	A5AU03_VITVI_213_359	100

Sequence based PCA Plot of the family - PF00450 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=70 Length=8
Motif2 Start=48 Length=8
Motif3 Start=3 Length=8
Motif4 Start=13 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay