3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12067

Details:

PFam ID : PF12067

PFam Domain Description : Sox C-terminal transactivation domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 48

Average sequence length: 172.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12067	C3VV18_ORYLA_229_411	52.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12067	E7F9I2_DANRE_205_430	100

Sequence based PCA Plot of the family - PF12067 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=23 Length=8
Motif3 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay