3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01174

Details:

PFam ID : PF01174

PFam Domain Description : SNO glutamine amidotransferase family

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 603

Average sequence length: 177.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01174	E3CRV7_STRVE_2_71	76.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01174	E3KZ81_PUCGT_24_250	100

Sequence based PCA Plot of the family - PF01174 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=59 Length=8
Motif2 Start=11 Length=18
Motif3 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay