3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02491

Details:

PFam ID : PF02491

PFam Domain Description : SHS2 domain inserted in FTSA

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 591

Average sequence length: 80.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02491	E2IL06_ELHV1_80_725	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02491	B0VH46_CLOAI_81_169	100

Sequence based PCA Plot of the family - PF02491 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=32 Length=21
Motif3 Start=19 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay