3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08323

Details:

PFam ID : PF08323

PFam Domain Description : Starch synthase catalytic domain

Number of Sequence in 50% Dataset : 183

Number of Sequence in Full Dataset : 1374

Average sequence length: 212.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08323	B3VDJ3_ORYSJ_4_68	90.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08323	D6GWC9_9EURY_1_72	99.9

Sequence based PCA Plot of the family - PF08323 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=131 Length=8
Motif3 Start=111 Length=14
Motif4 Start=17 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay