3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01127

Details:

PFam ID : PF01127

PFam Domain Description : Succinate dehydrogenase/Fumarate reductase transmembrane subunit

Number of Sequence in 50% Dataset : 218

Number of Sequence in Full Dataset : 1534

Average sequence length: 115.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01127	E6N635_9ARCH_3_145	87.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01127	E6N635_9ARCH_3_145	99.9

Sequence based PCA Plot of the family - PF01127 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=36 Length=8
Motif3 Start=47 Length=8
Motif4 Start=95 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay