3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01972

Details:

PFam ID : PF01972

PFam Domain Description : Serine dehydrogenase proteinase

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 238

Average sequence length: 198.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01972	D5BSE3_PUNMI_41_271	87.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01972	Q64BQ3_9ARCH_144_274	99.5

Sequence based PCA Plot of the family - PF01972 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=78 Length=8
Motif2 Start=191 Length=8
Motif3 Start=58 Length=8
Motif4 Start=24 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay