3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00686

Details:

PFam ID : PF00686

PFam Domain Description : Starch binding domain

Number of Sequence in 50% Dataset : 204

Number of Sequence in Full Dataset : 738

Average sequence length: 93.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00686	A2DJC0_TRIVA_8_123	98.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00686	E4K6Y6_9FIRM_19_121	100

Sequence based PCA Plot of the family - PF00686 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=20 Length=21
Motif3 Start=98 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay