3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01713

Details:

PFam ID : PF01713

PFam Domain Description : Smr domain

Number of Sequence in 50% Dataset : 155

Number of Sequence in Full Dataset : 1361

Average sequence length: 78.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01713	C1E279_MICSR_430_474	96.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01713	Q2NSH1_SODGM_98_135	100

Sequence based PCA Plot of the family - PF01713 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=52 Length=8
Motif2 Start=1 Length=21
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay