3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03536

Details:

PFam ID : PF03536

PFam Domain Description : Salmonella virulence-associated 28kDa protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 13

Average sequence length: 206.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03536	B6YY74_9RHOB_390_514	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03536	B6QZR7_9RHOB_3_245	100

Sequence based PCA Plot of the family - PF03536 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay