3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10114

Details:

PFam ID : PF10114

PFam Domain Description : Sensory domain found in PocR

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 302

Average sequence length: 162.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10114	D1N1E5_9BACT_37_130	96.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10114	E4RMD0_HALSL_5_191	100

Sequence based PCA Plot of the family - PF10114 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=20
Motif2 Start=100 Length=8
Motif3 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay