3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12352

Details:

PFam ID : PF12352

PFam Domain Description : Snare region anchored in the vesicle membrane C-terminus

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 476

Average sequence length: 64.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12352	A9V0I6_MONBE_201_266	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12352	Q4CNX7_TRYCR_150_215	100

Sequence based PCA Plot of the family - PF12352 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay