3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01403

Details:

PFam ID : PF01403

PFam Domain Description : Sema domain

Number of Sequence in 50% Dataset : 164

Number of Sequence in Full Dataset : 463

Average sequence length: 329.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01403	C4QFN4_SCHMA_433_675	74.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01403	E1GF74_LOALO_6_180	98.9

Sequence based PCA Plot of the family - PF01403 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=429 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay