3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04069

Details:

PFam ID : PF04069

PFam Domain Description : Substrate binding domain of ABC-type glycine betaine transport system

Number of Sequence in 50% Dataset : 201

Number of Sequence in Full Dataset : 1591

Average sequence length: 248.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04069	F0EDW3_9PSED_1_112	69.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04069	E2XA15_SHIDY_72_266	99.1

Sequence based PCA Plot of the family - PF04069 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=23 Length=8
Motif3 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay