3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08770

Details:

PFam ID : PF08770

PFam Domain Description : Sulphur oxidation protein SoxZ

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 254

Average sequence length: 97.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08770	D5MG42_9BACT_186_288	86.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08770	D5MG42_9BACT_186_288	100

Sequence based PCA Plot of the family - PF08770 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=20
Motif2 Start=74 Length=8
Motif3 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay