3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00530

Details:

PFam ID : PF00530

PFam Domain Description : Scavenger receptor cysteine-rich domain

Number of Sequence in 50% Dataset : 329

Number of Sequence in Full Dataset : 1668

Average sequence length: 96.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00530	A8HMP2_CHLRE_384_494	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00530	B8ZZ64_HUMAN_399_465	100

Sequence based PCA Plot of the family - PF00530 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=94 Length=17
Motif2 Start=1 Length=20
Motif3 Start=33 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay