3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00269

Details:

PFam ID : PF00269

PFam Domain Description : Small, acid-soluble spore proteins, alpha/beta type

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 443

Average sequence length: 56.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00269	C3L231_CLOB6_2_42	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00269	A8SI31_9FIRM_2_62	99.7

Sequence based PCA Plot of the family - PF00269 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=18
Motif2 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay