3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12914

Details:

PFam ID : PF12914

PFam Domain Description : SH3 domain of SH3b2 type

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 83

Average sequence length: 48.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12914	Q1MRN4_LAWIP_212_260	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12914	A5GA07_GEOUR_213_261	84

Sequence based PCA Plot of the family - PF12914 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=14
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay