3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01668

Details:

PFam ID : PF01668

PFam Domain Description : SmpB protein

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 994

Average sequence length: 67.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01668	D6PHY9_9VIRU_34_72	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01668	E0TIR2_ZINIC_1_69	99.8

Sequence based PCA Plot of the family - PF01668 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=8
Motif2 Start=27 Length=17
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay