3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05689

Details:

PFam ID : PF05689

PFam Domain Description : Salmonella repeat of unknown function (DUF823)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 125

Average sequence length: 169.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05689	A7MRS9_VIBHB_348_471	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05689	A7MRS9_VIBHB_348_471	100

Sequence based PCA Plot of the family - PF05689 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=18
Motif2 Start=2 Length=8
Motif3 Start=86 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay