3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00319

Details:

PFam ID : PF00319

PFam Domain Description : SRF-type transcription factor (DNA-binding and dimerisation domain)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 959

Average sequence length: 45.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00319	A7EQH5_SCLS1_1_51	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00319	C9SVT1_VERA1_5_52	100

Sequence based PCA Plot of the family - PF00319 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay