3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00957

Details:

PFam ID : PF00957

PFam Domain Description : Synaptobrevin

Number of Sequence in 50% Dataset : 148

Number of Sequence in Full Dataset : 701

Average sequence length: 80.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00957	Q4XKB8_PLACH_1_51	55.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00957	Q4SWN4_TETNG_3_95	100

Sequence based PCA Plot of the family - PF00957 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=1 Length=8
Motif3 Start=12 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay