3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12878

Details:

PFam ID : PF12878

PFam Domain Description : SICA extracellular beta domain

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 452

Average sequence length: 169.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12878	B3L5N1_PLAKH_1523_1577	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12878	B3L392_PLAKH_961_1139	98.2

Sequence based PCA Plot of the family - PF12878 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8
Motif4 Start=45 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay