3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07070

Details:

PFam ID : PF07070

PFam Domain Description : SpoOM protein

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 172

Average sequence length: 208.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07070	C5DA04_GEOSW_3_132	63.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07070	B0TRV1_SHEHH_2_227	100

Sequence based PCA Plot of the family - PF07070 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=121 Length=8
Motif3 Start=97 Length=8
Motif4 Start=9 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay