3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08498

Details:

PFam ID : PF08498

PFam Domain Description : Sterol methyltransferase C-terminal

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 142

Average sequence length: 65.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08498	F0Y131_9STRA_270_335	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08498	Q2HF89_CHAGB_240_306	100

Sequence based PCA Plot of the family - PF08498 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay